Dr. Jonas Zimmermann
contakt:
Botanischer Garten und Botanisches Museum Berlin-Dahlem
Freie Universität Berlin
Königin-Luise-Straße 6-8
D-14195 Berlin
Phone: (+4930) 838-50144
E-mail: j.zimmermann@bgbm.org
Publications
Zimmermann J, Glöckner G, Jahn R, Enke N, Gemeinholzer B (2014) Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies. Molecular Ecology Resources DOI: 10.1111/1755-0998.12336
Zimmermann J, Abarca N, Enke N, Skibbe O, Kusber W-H, Jahn R (2014) Taxonomic Reference Libraries for Environmental Barcoding: A Best Practice Example from Diatom Research. PlosOne DOI: 10.1371/journal.pone.0108793
Kistenich S, Dressler M, Zimmermann J., Hübener, T, Bastrop R, Jahn R (2014) An investigation into the morphology and genetics of Cyclotella comensis and closely related taxa. Diatom Research 29 (4) 423-440.
Abarca N, Jahn R, Zimmermann J, Enke N (2014) Does the Cosmopolitan Diatom Gomphonema parvulum (Kützing) Kützing have a Biogeography? PLoS ONE 9(1): e86885. doi:10.1371/journal.pone.0086885
Pawlowski J, Audic S, Adl S, Bass D, Belbahri L, Berney C, Bowser SS, Cepicka I, Decelle J, Dunthorn M, Fiore-Donno AM, Gile GH, Holzmann M, Jahn R, Jirků M, Keeling PJ, Kostka M, Kudryavtsev A, Lara E, Lukeš J, Mann DG, Mitchell EA, Nitsche F, Romeralo M, Saunders GW, Simpson AG, Smirnov AV, Spouge JL, Stern RF, Stoeck T, Zimmermann J, Schindel D, de Vargas C., PLoS Biol. 2012;10(11):e1001419.
Zimmermann J., Jahn R., Gemeinholzer B. 2011: Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Org Divers Evol DOI 10.1007/s13127-011-0050-6.
Talks
Zimmermann, J., Glöckner, G., Jahn, R., Pawlowski, J., de Vargas, C. & Gemeinholzer, B. 2013: "Barcoding diatoms with the 18S V4 region: setting an example for protists?" BioSyst.EU 2013 Global systematics, Vienna, Austria.
Enke, N., Abarca, N., Zimmermann, J., Skibbe, O. & Jahn, R. 2013: "Gomphonema parvulum revisited: A critical assessment of the taxonomic concept". BioSyst.EU 2013 Global systematics, Vienna, Austria.
Kusber, W.-H., Abarca, N., Zimmermann, J., von Mering, S. & Jahn, R. 2013: "Open access to protist biodiversity information: from file cards to GBIF". BioSyst.EU 2013 Global systematics, Vienna, Austria.
Jahn, R., Zimmermann, J., Romero, O. R. 2012: "A molecular approach to the taxonomy of Cocconeis placentula sensu lato". 22nd International Diatom Symposium Gent, Belgium.
Jahn, R., Zimmermann, J., Abarca, N., von Mering, S., Kusber, W.-H. 2012: „Diatom research: towards cybertaxonomy.“ 26. Treffen Deutschsprachiger Diatomologen, 6th Central European Diatom Meeting, Innsbruck, Austria.
Kusber, W.-H., Abarca, N., Skibbe, O., Zimmermann, J., Jahn, R. 2012: "Reference library of DNA-barcoced diatoms - A use case for publishing data via the GBIF database AlgaTerra". 22nd International Diatom Symposium Gent, Belgium.
Kusber, W.-H., Abarca, N., Skibbe, O., Zimmermann, J., Jahn, R. 2012: "Reference library of DNA-barcoced diatoms - A use case for publishing data via the GBIF database AlgaTerra". Institute Ruder Boskovic, Center for Marine Research, Rovinj, Croatia.
Romero, O., Jahn, R., Zimmermann, J. 2012: A culture based study of Cocconeis lineate Ehrenberg and Cocconeis euglypta Ehrenberg (Bacillariophyta): morphology, typification and barcoding”. 22nd International Diatom Symposium Gent, Belgium.
Zimmermann, J. 2012: “Next-Generation sequencing (NGS) methods in environmental barcoding – a progress report on biomonitoring o benthic river diatoms". Institute Ruder Boskovic, Center for Marine Research, Rovinj, Croatia.
Zimmermann, J., Glöckner, G., Jahn, R., Gemeinholzer, B. 2012: "Next-generation sequencing (NGS) methods in environmental barcoding - a progress report on biomonitoring of benthic river diatoms". 22nd International Diatom Symposium Gent, Belgium.
Zimmermann, J., Jahn, R., Gemeinholzer, B. 2012: "Diatom DNA barcoding revisited“. 14. Wissenschaftliche Tagung der Sektion Phykologie in der Deutschen Botanischen , Wissenschaftliche Tagung der Deutschen Gesellschaft für Protozoologie Wuppertal. (invited speaker)
Abarca, N. Zimmermann, J. Jahn, R. 2011: “Gomphonema parvulum Kützing: Evaluation of some morphological and molecular characters”. 5th Central European Diatom Meeting, Szczecin, Poland.
Abarca, N., Zimmermann, J. & Jahn, R. 2010: “Taxonomy of some species of the diatom genus Gomphonema using morphological and morphological data.” 21st International Diatom Symposium, St. Paul, USA.
Zimmermann, J., Gemeinholzer, B. & Jahn, R. 2010: “Barcoding diatoms: water monitoring via molecular methods. ” 21st International Diatom Symposium, St. Paul, USA.
Zimmermann, J., Gemeinholzer, B., Jahn, R. 2010: “Diatom barcoding: water monitoring using molecular tools.“ 2nd Conference of the European Consortium for the Barcode of Life, Braga, Portugal.
Pfannkuchen, M., Marić, D., Godrijan, J., Precali, R., Jahn, R., Gemeinholzer, B., Zimmermann, J. & Batel, R. 2010: “Regularly occurring domination of Skeletonema sp. in the winter phytoplankton of the northern Adriatic Sea. How to resolve the species?” 4th Central European Diatom Meeting 2010, Reichenau/Bodensee.
Zimmermann, J., Gemeinholzer, B., Kube, M. & Jahn, R. 2008: “Diatoms as bioindicators: watermonitoring via DNA barcoding.” Systematics 2008, Göttingen.
Posters
Pfannkuchen, M., Godrijan, J., Marić Pfannkuchen, D., Dröge, G., Kusber, W.-H., Zimmermann, J., Enke, N., Abarca, N. & Jahn, R. 2013: "Access to the planktonic biodiversity of the northern Adriatic".- BioSyst.EU 2013 Global systematics, Vienna, Austria.
Jahn, R., Zimmermann, J., Abarca, N., von Mering, S., Kusber, W.-H. 2012: "Diatom research: towards cybertaxonomy". 13. Jahrestagung der Gesellschaft für Biologische Systematik (GfBS),Bonn.
Zimmermann, J., Jahn, R., Glöckner, G., Gemeinholzer, B. 2012: "DNA barcoding of diatoms: establishment of routine laboratory“ 13. Jahrestagung der Gesellschaft für Biologische Systematik (GfBS), Bonn.
Zimmermann, J., Gemeinholzer, B., Kube, M., Reinhardt, R. & Jahn, R. 2009: “Watermonitoring via DNA barcoding: diatoms as bioindicators”. Systematics, Leiden, Netherlands.
Gemeinholzer, B., Zimmermann, J. & Jahn, R. 2008: “Establishing DNA-Barcoding Methods in Diatoms for Diversity Assessments.” Botany 2008, Vancouver, Canada.