Personal Homepage of Patrick Blumenkamp
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Contact
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CV
| 2021 - present | Scientific assistant for DFG Research Unit 5116 "exRNA" at JLU Gießen, Germany |
| 2020 | Scientific assistant for DZIF/TTU HAARBI at JLU Gießen, Germany |
| 2016 - 2019 | Scientific assistant for the HotSysAPP project, Giessen, Germany |
| 2016 | M.Sc. - Bioinformatics and Systems Biology, Institute for Bioinformatics and Systems Biology, Justus-Liebig-University, Giessen, Germany |
| 2014 |
B.Sc. - Biochemie, Georg-August-Universität Göttingen |
| 2009 - 2011 | Apprenticeship as chemical laboratory assistant, Ausbildungsinitiative Rheinland, Krefeld, Germany |
Publications
2024
Blumenkamp, P., Pfister, M., Diedrich, S., Brinkrolf, K., Jaenicke, S., Goesmann, A., (2024). Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. BMC bioinformatics. Volume 25(1), 138. DOI: 10.1186/s12859-024-05761-2
Meier, D., Rauch, C., Wagner, M., Klemm, P., Blumenkamp, P., Müller, R., Ellenberger, E., Karia, K., Vecchione, S., Serrania, J., (2024). A MoClo-compatible toolbox of ECF sigma factor-based regulatory switches for proteobacterial chassis. BioDesign Research. DOI: 10.34133/bdr.0025
2023
Kremer, K., Meier, D., Theis, L., Miller, S., Rost-Nasshan, A., Naing, Y., Zarzycki, J., Paczia, N., Serrania, J., Blumenkamp, P., (2023). Functional Degeneracy in Paracoccus denitrificans Pd1222 Is Coordinated via RamB, Which Links Expression of the Glyoxylate Cycle to Activity of the Ethylmalonyl-CoA Pathway. Applied and Environmental Microbiology. Volume 69(7), e00238--23. DOI: 10.1128/aem.00238-23
2022
Kuzmich, S., Blumenkamp, P., Meier, D., Szadkowski, D., Goesmann, A., Becker, A., Søgaard-Andersen, L.. (2022). CRP-Like Transcriptional Regulator MrpC Curbs c-di-GMP and 3′, 3′-cGAMP Nucleotide Levels during Development in Myxococcus xanthus. American Society for Microbiology 1752 N St., NW, Washington, DC. Volume 13(1), e00044--22. DOI: 10.1128/mbio.00044-22
2018
Jaenicke, S., Albaum, S., Blumenkamp, P., Linke, B., Stoye, J., Goesmann, A.. (2018). Flexible metagenome analysis using the MGX framework. Springer. Volume 6(1), 1--9. DOI: 10.1186/s40168-018-0460-1
Schult, F., Le, T., Albersmeier, A., Rauch, B., Blumenkamp, P., van der Does, C., Goesmann, A., Kalinowski, J., Albers, S., Siebers, B.. (2018). Effect of UV irradiation on Sulfolobus acidocaldarius and involvement of the general transcription factor TFB3 in the early UV response. Oxford University Press. Volume 46(14), 7179--7192. DOI: 10.1093/nar/gky527