Links and Tutorials
Protein and genome sequence databases:
Protein expression resources:
Proteomics raw data repositories:
http://www.proteomexchange.org/
https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp
jPOSTrepo (Japan ProteOme STandard Repository)
Links for Software:
Mascot (Matrix Science, London, UK)
SequestHT (ThermoFisher, Waltham, USA)
Proteome Discoverer (Thermo Fisher, Waltham, USA)
MaxQuant (Max Planck Institute of Biochemistry, Martinsried, Germany)
Perseus (Max Planck Institute of Biochemistry, Martinsried, Germany)
COMET (University of Washington, Seattle, USA)
Skyline (University of Washington, Seattle, USA)
Crux (University of Washington, Seattle, USA)
SpectraST (Institute for Systems Biology, Seattle, USA)
PMI-Byonic (Protein Metrics Inc., Cupertino, USA)
PEAKS (Bioinformatics Solutions Inc., Waterloo, Canada)